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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1138443_1140009_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1138443 - 1140009
Intron Length:
1567

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGG|GCCCGGGGG
5'SS Class:
major
3'SS Sequence:
CTTCTTTCCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
CCCCCTCTAACC
Flanking Amino Acid:
ASMLNVRMGLAYDPQQIFKC
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.1
0.29
1.3
51.9
42
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
79.3
0.66
0.7
73.1
31.8
Minor 5ss
12.2
-4.4
3.6
11.5
28.2
Minor BPS
49.2
-0
1.7
55.94
42.8

Associated Gene:

Gene:
TRAF7
Ensembl Gene ID:
ENSAPLG00000007038
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007359
1133237 - 1147929
14693