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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11397270_11397434_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11397270 - 11397434
Intron Length:
165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAATGAA
5'SS Class:
major
3'SS Sequence:
GTTTTCATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTGTTTTCATT
Flanking Amino Acid:
TDCEEAGTEERLMLCGSQLF
Intron Amino Acid Position:
1335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
70.9
35
Major BPS
100
1.24
0.5
100
0
Major PPT
85
0.79
0.8
82.2
34.1
Minor 5ss
26.8
-2.7
3
31.8
42.6
Minor BPS
56.6
0.29
1.8
78.3
39.3

Associated Gene:

Gene:
ADCY9
Ensembl Gene ID:
ENSAPLG00000015325
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047042
11396500 - 11478209
81710
ENSAPLT00000015986
11396500 - 11478209
81710