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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1140577_1140927_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1140577 - 1140927
Intron Length:
351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGAGC
5'SS Class:
major
3'SS Sequence:
CTTCCCCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTGCAG
U12 Branch Point Sequence:
ACTGCTGCAGCC
Flanking Amino Acid:
EHIKCPHSKYGCTFIGNQDT
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
67.8
43.5
Major BPS
38.5
-0.7
1.7
45
47.8
Major PPT
76
0.58
0.7
70.2
23.7
Minor 5ss
32.2
-2
3.1
34.8
41.4
Minor BPS
38.8
-0.8
2.2
48.18
42.2

Associated Gene:

Gene:
TRAF7
Ensembl Gene ID:
ENSAPLG00000007038
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007359
1133237 - 1147929
14693