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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1141061_1147657_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1141061 - 1147657
Intron Length:
6597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTTCATG
5'SS Class:
weak_major
3'SS Sequence:
TCCCTGGGCAGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TTTTCCTTCCTT
Flanking Amino Acid:
ADSCTELEQTDHESSCDYRP
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60
0.24
1.2
59.3
44.9
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
45.9
-0.2
1.7
47.6
39.3
Minor 5ss
45.5
-0.5
2.5
58.2
46
Minor BPS
48.3
-0
3.6
87.41
38.9

Associated Gene:

Gene:
TRAF7
Ensembl Gene ID:
ENSAPLG00000007038
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007359
1133237 - 1147929
14693