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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11418529_11421751_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11418529 - 11421751
Intron Length:
3223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
GTGTTCCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
CTTCCCTCAACC
Flanking Amino Acid:
MAYRTSYQEEVIRNAPVKTF
Intron Amino Acid Position:
766

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.4
1.02
0.7
87.4
21.4
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
72.9
0.52
1
66.8
39.6
Minor 5ss
39.3
-1.2
2.9
52
45.2
Minor BPS
68.8
0.57
1.6
76.58
39.5

Associated Gene:

Gene:
ADCY9
Ensembl Gene ID:
ENSAPLG00000015325
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025791
11396500 - 11478209
81710
ENSAPLT00000015986
11396500 - 11478209
81710
ENSAPLT00000047042
11396500 - 11478209
81710