About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11421855_11425806_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11421855 - 11425806
Intron Length:
3952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TGATGCTGAACT
Flanking Amino Acid:
AHFVDVIKEDSLMKDYFFKP
Intron Amino Acid Position:
731

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
86.3
0.82
0.6
85.5
21.9
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
60.7
0.41
1.9
78.99
42.5

Associated Gene:

Gene:
ADCY9
Ensembl Gene ID:
ENSAPLG00000015325
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047042
11396500 - 11478209
81710
ENSAPLT00000025791
11396500 - 11478209
81710
ENSAPLT00000015986
11396500 - 11478209
81710