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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11426025_11435434_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11426025 - 11435434
Intron Length:
9410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
CTTTCTGTCATG
Flanking Amino Acid:
KTLKHVEKPKAPGGHSPKTQ
Intron Amino Acid Position:
624

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69.3
36.6
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
78.7
0.65
0.9
73.7
36
Minor 5ss
37.6
-1.4
3.2
50.9
45.7
Minor BPS
45.8
-0.4
2.4
57.98
44.9

Associated Gene:

Gene:
ADCY9
Ensembl Gene ID:
ENSAPLG00000015325
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047042
11396500 - 11478209
81710