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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11435608_11475822_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11435608 - 11475822
Intron Length:
40215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGCT
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CTTTCTGCAATT
Flanking Amino Acid:
GQSVVADQLKGLKTYLISGQ
Intron Amino Acid Position:
566

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
79
35.1
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
74.7
0.56
0.8
66.4
35.8
Minor 5ss
34.3
-1.8
3.4
50.5
46
Minor BPS
50.4
0.09
2.2
75.4
42.3

Associated Gene:

Gene:
ADCY9
Ensembl Gene ID:
ENSAPLG00000015325
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047042
11396500 - 11478209
81710
ENSAPLT00000025791
11396500 - 11478209
81710
ENSAPLT00000015986
11396500 - 11478209
81710