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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11494423_11495275_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11494423 - 11495275
Intron Length:
853

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGCAT
U12 Branch Point Sequence:
TGTCTCCCATCT
Flanking Amino Acid:
NEDKPADDFSGVLQRLRKIY
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.1
37.5
Major BPS
62.4
0.31
1.4
73.6
41.8
Major PPT
79
0.65
0.8
73
32
Minor 5ss
23.1
-3.1
3.2
27.7
44.2
Minor BPS
44.7
-0.3
2
67.32
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017631
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036606
11489882 - 11505239
15358