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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11498157_11505178_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11498157 - 11505178
Intron Length:
7022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGCTC
5'SS Class:
major
3'SS Sequence:
TCTCATCGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTGTTCTCATCG
Flanking Amino Acid:
VASLLLLGTAEPRTPAPDVG
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
68
43.2
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
71.5
0.48
0.9
69.7
36.4
Minor 5ss
34.2
-1.8
3.6
50.1
46.4
Minor BPS
48.2
-0.2
1.9
54.68
46.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017631
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036606
11489882 - 11505239
15358