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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11510237_11514240_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11510237 - 11514240
Intron Length:
4004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGCAC
5'SS Class:
major
3'SS Sequence:
GCCTCTCTCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
CCTCTCACACCC
Flanking Amino Acid:
SEKEVIGGLCSLANIPLTPE
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1
60
40.8
Major BPS
72.7
0.56
1
75
30.1
Major PPT
74.3
0.55
0.8
68.3
31.9
Minor 5ss
24.2
-3
3.3
31.4
43.2
Minor BPS
40.6
-0.7
1.9
48.2
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023899
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021629
11505957 - 11514574
8618