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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11542181_11549737_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11542181 - 11549737
Intron Length:
7557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGGACA
5'SS Class:
major
3'SS Sequence:
TCACTCCTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TCCCCGTTATCC
Flanking Amino Acid:
LHLDAGHLARLQRPRVHPAA
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
63.2
42.9
Major BPS
77.7
0.69
1
81
30.2
Major PPT
78.5
0.64
0.8
69.5
36.6
Minor 5ss
30.7
-2.2
3.3
31.7
42.5
Minor BPS
46.9
-0.2
2.3
59.18
45.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025258
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038398
11539575 - 11562618
23044