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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11560457_11560855_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11560457 - 11560855
Intron Length:
399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
AGGCCCTGACCG
Flanking Amino Acid:
WDVGQQQPLAALEPHGDQLQ
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
81.3
0.7
0.7
73.7
31.3
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
46.6
-0.3
1.8
49.27
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025258
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038398
11539575 - 11562618
23044