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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11561040_11561468_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
11561040 - 11561468
Intron Length:
429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTGGGGGCCGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
TGACCCACATCT
Flanking Amino Acid:
LLATGSADETVKVWRLPESG
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
80.9
33.1
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
54.7
0.11
1.1
45.8
41.4
Minor 5ss
33.4
-1.9
2.8
44.7
42.7
Minor BPS
45.1
-0.3
2
65.25
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025258
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038398
11539575 - 11562618
23044