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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11570307_11573131_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11570307 - 11573131
Intron Length:
2825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCTGG
5'SS Class:
major
3'SS Sequence:
GCTTCAATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
CTTGCTTCAATT
Flanking Amino Acid:
TVNGVTNTASGKRSTGN*
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.1
56.7
45
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
74.2
0.55
0.9
66.8
38.3
Minor 5ss
36.4
-1.5
3.2
46.4
49
Minor BPS
59.6
0.38
1.7
75.4
42.3

Associated Gene:

Gene:
DNAJA3
Ensembl Gene ID:
ENSAPLG00000014210
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014828
11565619 - 11573491
7873