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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11579263_11586654_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11579263 - 11586654
Intron Length:
7392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTGC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTGGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCCCCCTCACCT
Flanking Amino Acid:
GDVEKAARGREPMVQKHLES
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
73.9
38
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
70.9
0.47
1
68.7
37.2
Minor 5ss
37.1
-1.5
3.3
50.2
46.4
Minor BPS
51.1
0.11
1.9
69.41
47.1

Associated Gene:

Gene:
NLRC3
Ensembl Gene ID:
ENSAPLG00000007304
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022844
11578767 - 11594751
15985
ENSAPLT00000022719
11578767 - 11595903
17137
ENSAPLT00000032835
11578767 - 11595903
17137