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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11584939_11585448_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11584939 - 11585448
Intron Length:
510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCGTAC
U12 Branch Point Sequence:
CGTACCAGAGCC
Flanking Amino Acid:
MEEAWISRYQKQ
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
81.3
32.8
Major BPS
47.7
-0.1
1.3
46.7
38.6
Major PPT
77.8
0.63
0.7
72.7
25.4
Minor 5ss
29
-2.4
3.2
40.6
45.6
Minor BPS
43.7
-0.5
1.9
54.34
42.7

Associated Gene:

Gene:
NLRC3
Ensembl Gene ID:
ENSAPLG00000007304
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007591
11584749 - 11595903
11155