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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11588399_11588721_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11588399 - 11588721
Intron Length:
323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCGC
5'SS Class:
strong_major
3'SS Sequence:
CTATTTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTCTAT
U12 Branch Point Sequence:
TTTCCTTCTATT
Flanking Amino Acid:
LPQLLFCHNLRLDNNQFKDN
Intron Amino Acid Position:
671

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
67.8
43.5
Major BPS
61.5
0.29
1.3
62.1
44.1
Major PPT
82
0.72
0.8
73.8
36.6
Minor 5ss
31.1
-2.2
3.3
41.9
44.9
Minor BPS
53.8
0.2
1.8
77.67
38.7

Associated Gene:

Gene:
NLRC3
Ensembl Gene ID:
ENSAPLG00000007304
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007591
11584749 - 11595903
11155
ENSAPLT00000032835
11578767 - 11595903
17137
ENSAPLT00000031577
11584749 - 11594751
10003
ENSAPLT00000022844
11578767 - 11594751
15985
ENSAPLT00000022719
11578767 - 11595903
17137