Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11588809_11589822_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11588809 - 11589822

Intron Length:

1014

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGACCT

5'SS Class:

strong_major

3'SS Sequence:

TGCCTCGCCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAC

U12 Branch Point Sequence:

TTCTGCTCACCT

Flanking Amino Acid:

SVKDCQIQKLSLRSNSIGPS

Intron Amino Acid Position:

776

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.5

0.72

41.8

Major BPS

69.8

0.49

1.1

71.3

36.7

Major PPT

66.9

0.38

0.9

57.5

38.6

Minor 5ss

33.2

-1.9

3.4

48.6

47.1

Minor BPS

49.6

0.05

2.2

75.75

46.8

Associated Gene:

Gene:

NLRC3

Ensembl Gene ID:

ENSAPLG00000007304

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022719

11578767 - 11595903

17137