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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11589907_11590323_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11589907 - 11590323
Intron Length:
417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
GTGCTCACAGCT
Flanking Amino Acid:
LKKNQVLLSLNLQHNVIKED
Intron Amino Acid Position:
756

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
79
35.3
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
82.5
0.73
0.7
76.4
25.6
Minor 5ss
40.5
-1.1
3
54
37
Minor BPS
42.5
-0.4
1.9
59.52
43.3

Associated Gene:

Gene:
NLRC3
Ensembl Gene ID:
ENSAPLG00000007304
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007591
11584749 - 11595903
11155
ENSAPLT00000032835
11578767 - 11595903
17137
ENSAPLT00000031577
11584749 - 11594751
10003
ENSAPLT00000022844
11578767 - 11594751
15985
ENSAPLT00000022719
11578767 - 11595903
17137