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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11590408_11590771_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11590408 - 11590771
Intron Length:
364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTGAC
5'SS Class:
major
3'SS Sequence:
CTCTCCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
TGGCTGATAATC
Flanking Amino Acid:
LLTNHKLTTLHLQKNSIGAQ
Intron Amino Acid Position:
784

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1
66
33.7
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
85.3
0.79
0.7
79.9
25.4
Minor 5ss
29.7
-2.3
3.2
40
40.1
Minor BPS
42.9
-0.5
2.1
52.88
38.8

Associated Gene:

Gene:
NLRC3
Ensembl Gene ID:
ENSAPLG00000007304
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031577
11584749 - 11594751
10003
ENSAPLT00000022844
11578767 - 11594751
15985
ENSAPLT00000022719
11578767 - 11595903
17137
ENSAPLT00000007591
11584749 - 11595903
11155
ENSAPLT00000032835
11578767 - 11595903
17137