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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11591575_11591797_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11591575 - 11591797
Intron Length:
223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGTCCC
5'SS Class:
major
3'SS Sequence:
CTCTTTGTGTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
CCTGTCCTAATG
Flanking Amino Acid:
LKVNHSLQSLDLQSNSISSA
Intron Amino Acid Position:
840

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.1
63.5
41.4
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
75.5
0.57
1
75.9
38
Minor 5ss
36.8
-1.5
2.9
42.7
37.7
Minor BPS
47.4
-0.3
1.8
50.59
44.5

Associated Gene:

Gene:
NLRC3
Ensembl Gene ID:
ENSAPLG00000007304
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022844
11578767 - 11594751
15985
ENSAPLT00000022719
11578767 - 11595903
17137
ENSAPLT00000007591
11584749 - 11595903
11155
ENSAPLT00000032835
11578767 - 11595903
17137
ENSAPLT00000031577
11584749 - 11594751
10003