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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11591882_11592713_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11591882 - 11592713
Intron Length:
832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGCCCAG
U12 Branch Point Sequence:
CTGTCTTTCCCC
Flanking Amino Acid:
LCSNKGLVNLNLRENSISKE
Intron Amino Acid Position:
868

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
73.6
37.1
Major BPS
38.5
-0.7
1.5
41.5
41.3
Major PPT
80.6
0.69
0.8
73.1
37.3
Minor 5ss
34.7
-1.7
3.2
43.8
38
Minor BPS
40.8
-0.7
3.5
61.04
45.1

Associated Gene:

Gene:
NLRC3
Ensembl Gene ID:
ENSAPLG00000007304
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031577
11584749 - 11594751
10003
ENSAPLT00000022719
11578767 - 11595903
17137
ENSAPLT00000007591
11584749 - 11595903
11155
ENSAPLT00000032835
11578767 - 11595903
17137