Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11592980_11593199_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11592980 - 11593199

Intron Length:

220

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTGAGTTTC

5'SS Class:

major

3'SS Sequence:

CCTTTTTTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCTTCAG

U12 Branch Point Sequence:

CAGCCTTCAGCT

Flanking Amino Acid:

MKENRALTSLHLQWNFIQAN

Intron Amino Acid Position:

924

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.57

72.4

33.5

Major BPS

51.1

0.03

1.6

43.2

Major PPT

91.5

0.93

0.6

87.3

Minor 5ss

41.5

-0.9

58.2

40.5

Minor BPS

46.2

-0.2

1.8

58.79

44.3

Associated Gene:

Gene:

NLRC3

Ensembl Gene ID:

ENSAPLG00000007304

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032835

11578767 - 11595903

17137

ENSAPLT00000031577

11584749 - 11594751

10003

ENSAPLT00000022719

11578767 - 11595903

17137

ENSAPLT00000007591

11584749 - 11595903

11155