Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11593284_11593424_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11593284 - 11593424

Intron Length:

141

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGA|GTAAGTGTG

5'SS Class:

major

3'SS Sequence:

TTCCCTGTCTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCAGGAT

U12 Branch Point Sequence:

AGACGCAGGATT

Flanking Amino Acid:

LKSNSSLASLDLQENAIGDE

Intron Amino Acid Position:

952

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.1

0.62

1.1

69.9

41.1

Major BPS

41.9

-0.5

1.5

33.4

42.7

Major PPT

73.7

0.53

0.8

72.5

32.2

Minor 5ss

37.6

-1.4

3.3

45.7

43.5

Minor BPS

38.3

-0.8

1.9

50.31

36.7

Associated Gene:

Gene:

NLRC3

Ensembl Gene ID:

ENSAPLG00000007304

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022844

11578767 - 11594751

15985

ENSAPLT00000022719

11578767 - 11595903

17137

ENSAPLT00000007591

11584749 - 11595903

11155

ENSAPLT00000032835

11578767 - 11595903

17137

ENSAPLT00000031577

11584749 - 11594751

10003