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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11593509_11593624_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11593509 - 11593624
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
TGTTCTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAA
U12 Branch Point Sequence:
ATGCACTGAAGG
Flanking Amino Acid:
LKVNTTLADLHLQVASIGAA
Intron Amino Acid Position:
980

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1
63.4
35.3
Major BPS
62
0.3
1
53
34.1
Major PPT
86.6
0.82
0.8
81.1
30.9
Minor 5ss
30.7
-2.2
3.1
41.6
38.8
Minor BPS
44.7
-0.5
1.9
49.46
43.7

Associated Gene:

Gene:
NLRC3
Ensembl Gene ID:
ENSAPLG00000007304
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007591
11584749 - 11595903
11155
ENSAPLT00000032835
11578767 - 11595903
17137
ENSAPLT00000031577
11584749 - 11594751
10003
ENSAPLT00000022844
11578767 - 11594751
15985
ENSAPLT00000022719
11578767 - 11595903
17137