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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11593709_11593951_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11593709 - 11593951
Intron Length:
243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
CCTTCCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
TCCTTCCCCATG
Flanking Amino Acid:
LMVNKSLQILDLRGNSIGVA
Intron Amino Acid Position:
1008

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
72.5
37.3
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
85.5
0.8
0.7
80
25.3
Minor 5ss
36.6
-1.5
3.3
47.2
42.3
Minor BPS
39.3
-0.9
2.1
43
43.2

Associated Gene:

Gene:
NLRC3
Ensembl Gene ID:
ENSAPLG00000007304
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022844
11578767 - 11594751
15985
ENSAPLT00000022719
11578767 - 11595903
17137
ENSAPLT00000007591
11584749 - 11595903
11155
ENSAPLT00000032835
11578767 - 11595903
17137
ENSAPLT00000031577
11584749 - 11594751
10003