Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11594746_11595876_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11594746 - 11595876

Intron Length:

1131

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGTGAGGG

5'SS Class:

major

3'SS Sequence:

CCTTTCCTAGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCAGAG

U12 Branch Point Sequence:

CCTTTCCTAGCA

Flanking Amino Acid:

RTNAPDCIVEVTFWAGSC*

Intron Amino Acid Position:

1093

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.9

0.61

58.6

40.6

Major BPS

45.1

-0.3

1.5

42.6

40.5

Major PPT

77.9

0.63

0.8

73.9

29.6

Minor 5ss

30.5

-2.2

3.2

46.9

Minor BPS

49.5

-0

1.9

63.21

43.4

Associated Gene:

Gene:

NLRC3

Ensembl Gene ID:

ENSAPLG00000007304

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022719

11578767 - 11595903

17137

ENSAPLT00000007591

11584749 - 11595903

11155

ENSAPLT00000032835

11578767 - 11595903

17137