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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11621483_11643346_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11621483 - 11643346
Intron Length:
21864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACAG
5'SS Class:
major
3'SS Sequence:
TCACCCATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTTTTCTGACTT
Flanking Amino Acid:
HHRTEQEMFEEAANMLRLMQ
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
64.9
41
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
72.9
0.52
0.9
65.5
34.5
Minor 5ss
30.7
-2.2
3.1
38.3
46.6
Minor BPS
56.7
0.29
1.8
75.82
41.6

Associated Gene:

Gene:
CLUAP1
Ensembl Gene ID:
ENSAPLG00000007325
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044912
11598958 - 11669540
70583
ENSAPLT00000034082
11598958 - 11669540
70583
ENSAPLT00000007630
11598958 - 11669540
70583