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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1162748_1163039_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1162748 - 1163039
Intron Length:
292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CCCCTTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGGTAAC
U12 Branch Point Sequence:
GGAAAGGTAACG
Flanking Amino Acid:
NVDLAFTAIAKELKHRSMKL
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
75.1
35.1
Major BPS
50.5
0.01
1.3
53.1
40.5
Major PPT
78.2
0.63
0.7
72.3
25.9
Minor 5ss
33.7
-1.9
3.2
40.4
40
Minor BPS
35.9
-1.2
2.5
39.8
43

Associated Gene:

Gene:
RAB26
Ensembl Gene ID:
ENSAPLG00000007208
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007483
1162645 - 1167087
4443