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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1163524_1163817_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1163524 - 1163817
Intron Length:
294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TTGCTGTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
ACCTCCCAAATC
Flanking Amino Acid:
DVVLMLLGNKVDSAQDRVVK
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
71.6
0.54
1
72
33.1
Major PPT
72.2
0.5
1.1
68.8
41.9
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
47.6
-0.2
2
56.8
42.4

Associated Gene:

Gene:
RAB26
Ensembl Gene ID:
ENSAPLG00000007208
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007483
1162645 - 1167087
4443