Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1163884_1165118_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1163884 - 1165118

Intron Length:

1235

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGTGCA

5'SS Class:

strong_major

3'SS Sequence:

TGTCTCCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CCGGCAG

U12 Branch Point Sequence:

CTCCCGGCAGCT

Flanking Amino Acid:

TNKASFDNIQAWLTEIHEYA

Intron Amino Acid Position:

106

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.9

0.85

0.9

75.2

34.9

Major BPS

34.6

-0.9

1.5

34.4

42.4

Major PPT

80.4

0.68

0.8

31.1

Minor 5ss

31.9

-2.1

3.3

41.7

44.9

Minor BPS

34.3

-1.1

2.6

53.08

47.8

Associated Gene:

Gene:

RAB26

Ensembl Gene ID:

ENSAPLG00000007208

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007483

1162645 - 1167087

4443