Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11644814_11646906_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11644814 - 11646906

Intron Length:

2093

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGCAAA

5'SS Class:

strong_major

3'SS Sequence:

CCTTCTCCTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATCAT

U12 Branch Point Sequence:

TGTGGTTTATCA

Flanking Amino Acid:

MVKIAIDCVLEQVQKTKDML

Intron Amino Acid Position:

194

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

0.9

75.9

35.2

Major BPS

88.2

0.95

0.9

88.3

28.5

Major PPT

79.5

0.66

0.7

77.5

24.5

Minor 5ss

38.8

-1.3

2.9

45.4

43.9

Minor BPS

48.1

-0.1

2.1

63.32

43.5

Associated Gene:

Gene:

CLUAP1

Ensembl Gene ID:

ENSAPLG00000007325

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044912

11598958 - 11669540

70583

ENSAPLT00000034082

11598958 - 11669540

70583

ENSAPLT00000007630

11598958 - 11669540

70583