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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11646991_11661346_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11646991 - 11661346
Intron Length:
14356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TACTGTTTAAAT
Flanking Amino Acid:
DLLGKEVELREARTESIARP
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.1
0.77
0.7
80.4
31.4
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
57.5
0.32
1.9
73.99
42.9

Associated Gene:

Gene:
CLUAP1
Ensembl Gene ID:
ENSAPLG00000007325
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044912
11598958 - 11669540
70583
ENSAPLT00000034082
11598958 - 11669540
70583
ENSAPLT00000007630
11598958 - 11669540
70583