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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_1165172_1165245_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1165172 - 1165245
Intron Length:
74

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCACT
5'SS Class:
major
3'SS Sequence:
GCTCTCTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
GCTCTCTCCACA
Flanking Amino Acid:
VTHAYYRDAHALLLLYDVTN
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
71.8
39.7
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
74.8
0.56
0.8
68.3
32.1
Minor 5ss
37.1
-1.5
3
51
45.2
Minor BPS
46.6
-0.2
1.9
57.33
42

Associated Gene:

Gene:
RAB26
Ensembl Gene ID:
ENSAPLG00000007208
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007483
1162645 - 1167087
4443