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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11661443_11662455_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11661443 - 11662455
Intron Length:
1013

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
GCTCTGTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATGAAT
U12 Branch Point Sequence:
TTGCCAATGAAT
Flanking Amino Acid:
SKFKFDLGSKIADLKAARQL
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
77.7
32
Major BPS
58
0.2
1.3
67.7
36.5
Major PPT
78
0.63
0.9
68.5
42.1
Minor 5ss
33.3
-1.9
3.2
39.8
40.3
Minor BPS
46
-0.2
2
68.5
41.7

Associated Gene:

Gene:
CLUAP1
Ensembl Gene ID:
ENSAPLG00000007325
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044912
11598958 - 11669540
70583
ENSAPLT00000034082
11598958 - 11669540
70583
ENSAPLT00000007630
11598958 - 11669540
70583