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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11662636_11667247_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11662636 - 11667247
Intron Length:
4612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTCTG
5'SS Class:
major
3'SS Sequence:
TTTCTTCCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTTTGTTACAT
Flanking Amino Acid:
FFIKAVAQFMATKAHIKLNT
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
67.1
43.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
73.6
0.53
1
75.1
27.5
Minor 5ss
44.1
-0.6
2.8
55.2
43.3
Minor BPS
47.7
-0
2.3
72.05
45.1

Associated Gene:

Gene:
CLUAP1
Ensembl Gene ID:
ENSAPLG00000007325
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007630
11598958 - 11669540
70583
ENSAPLT00000044912
11598958 - 11669540
70583
ENSAPLT00000034082
11598958 - 11669540
70583