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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11669306_11669518_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11669306 - 11669518
Intron Length:
213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGCAAG
5'SS Class:
major
3'SS Sequence:
TTGTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAG
U12 Branch Point Sequence:
TCGCTCTCAGCT
Flanking Amino Acid:
MSFRDLRNFTEMMRALG
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.8
0.37
1.1
59
41.7
Major BPS
58.6
0.22
1.5
69
38.9
Major PPT
92.9
0.97
0.7
92.3
26.6
Minor 5ss
35.5
-1.6
2.9
45.2
43.7
Minor BPS
48.4
-0
1.8
65.18
45.3

Associated Gene:

Gene:
CLUAP1
Ensembl Gene ID:
ENSAPLG00000007325
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007630
11598958 - 11669540
70583