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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11692172_11693389_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11692172 - 11693389
Intron Length:
1218

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CACTTCTGACAG
Flanking Amino Acid:
KDAGVLLDQIKSCQAELSSR
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
27.2
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
79
0.65
1
76.3
37.7
Minor 5ss
44.5
-0.6
2.8
60
38.4
Minor BPS
42.7
-0.6
1.8
41.83
42.8

Associated Gene:

Gene:
ANKS3
Ensembl Gene ID:
ENSAPLG00000007413
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043529
11689352 - 11702022
12671