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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11706077_11708603_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11706077 - 11708603
Intron Length:
2527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGCACT
5'SS Class:
major
3'SS Sequence:
TCTCTGTTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
TTCTATTTAACT
Flanking Amino Acid:
LPSLDSDTSTSDCESDEELF
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
69.4
41.2
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
75.3
0.57
1
71.5
38.4
Minor 5ss
44.2
-0.6
2.9
64.9
39.9
Minor BPS
75.9
0.89
1.4
88.66
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030133
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038546
11705930 - 11805643
99714