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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11708718_11709854_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11708718 - 11709854
Intron Length:
1137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGTTGGC
5'SS Class:
major
3'SS Sequence:
TCTCTACCTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTGAC
U12 Branch Point Sequence:
TTTTCTCTACCT
Flanking Amino Acid:
EFSLEDADTQQVKETGRYPW
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.7
0.28
1.3
55.5
42.2
Major BPS
62.5
0.31
1.2
54.8
42.1
Major PPT
76.2
0.59
0.8
70.7
29.1
Minor 5ss
28.1
-2.5
3.1
36.1
40.7
Minor BPS
64.3
0.53
1.9
88.42
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030133
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038546
11705930 - 11805643
99714