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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11714833_11715671_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11714833 - 11715671
Intron Length:
839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTCT
5'SS Class:
strong_major
3'SS Sequence:
ACTTATTTCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
TCTAACTTATTT
Flanking Amino Acid:
KSVTFHDENQSAGDSSTEEE
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
83.8
28
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
74.2
0.55
0.8
68.8
36.3
Minor 5ss
42.2
-0.9
2.9
59.5
45
Minor BPS
54.7
0.22
1.8
73.56
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030133
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038546
11705930 - 11805643
99714