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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11756393_11758558_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11756393 - 11758558
Intron Length:
2166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTACAAT
U12 Branch Point Sequence:
TTGTCTTTCACA
Flanking Amino Acid:
PQHDVLLSSSEKLPSSYASE
Intron Amino Acid Position:
849

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.2
31.9
Major BPS
65.2
0.38
1.3
73.4
38.5
Major PPT
84.2
0.77
0.8
79.7
32.4
Minor 5ss
33.9
-1.8
3.3
47.6
48
Minor BPS
68.9
0.59
1.7
78.71
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030133
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038546
11705930 - 11805643
99714