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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11758872_11764093_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11758872 - 11764093
Intron Length:
5222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATGGCA
5'SS Class:
major
3'SS Sequence:
TGTTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CCTTGCATAACA
Flanking Amino Acid:
LDPASRCNRVRSQSPSSTRA
Intron Amino Acid Position:
953

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
64.7
34.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
86.2
0.81
0.7
85.6
29.2
Minor 5ss
24.1
-3
3.2
30.2
42.9
Minor BPS
53.5
0.11
2.1
67.8
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030133
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038546
11705930 - 11805643
99714