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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11764201_11767385_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11764201 - 11767385
Intron Length:
3185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTGAT
5'SS Class:
major
3'SS Sequence:
CTTTTTGACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
GTTTTCTTACTC
Flanking Amino Acid:
PPAMLVSTSKGDIILMVSPV
Intron Amino Acid Position:
989

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.3
74
36.6
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
71.8
0.49
0.9
65.9
40
Minor 5ss
35.9
-1.6
3.1
49.2
47.1
Minor BPS
66.4
0.49
1.6
74.33
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030133
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038546
11705930 - 11805643
99714