Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11767541_11768888_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11767541 - 11768888

Intron Length:

1348

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACCGGTC

5'SS Class:

major

3'SS Sequence:

CTTGTTATTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTAAT

U12 Branch Point Sequence:

AGTAGTTTAATC

Flanking Amino Acid:

AIVLSMTTSQIAVFCPRKIS

Intron Amino Acid Position:

1041

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.4

0.41

1.2

64.6

41.6

Major BPS

81.8

0.79

1.1

34.5

Major PPT

0.77

0.8

81.4

34.9

Minor 5ss

38.3

-1.3

3.8

58.4

46.5

Minor BPS

52.6

0.06

1.8

61.97

37.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030133

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038546

11705930 - 11805643

99714