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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11772913_11774359_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11772913 - 11774359
Intron Length:
1447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGTCAA
5'SS Class:
major
3'SS Sequence:
TTCTCTTGGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GTTTTGATGATT
Flanking Amino Acid:
PYTETLLQALGGNLSAVPDP
Intron Amino Acid Position:
1134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.1
65
42.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
73
0.52
1.1
68.7
42
Minor 5ss
31.7
-2.1
3.1
31.8
42.6
Minor BPS
47
-0.1
2.3
72
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030133
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038546
11705930 - 11805643
99714