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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11774555_11775827_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11774555 - 11775827
Intron Length:
1273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACCACA
5'SS Class:
major
3'SS Sequence:
CTTTCACTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TTTCCTTTCACT
Flanking Amino Acid:
PGSSNQSQNAEGPDSGFELL
Intron Amino Acid Position:
1199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.2
67.6
39.4
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
83.8
0.76
0.8
77.7
29.8
Minor 5ss
39.8
-1.1
2.8
49.8
46.2
Minor BPS
70.9
0.74
1.7
89.23
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030133
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038546
11705930 - 11805643
99714