About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11777762_11779423_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11777762 - 11779423
Intron Length:
1662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TACTTATTAATC
Flanking Amino Acid:
PPPRKKSRAEAEKSQRCREE
Intron Amino Acid Position:
1329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.7
86.9
22.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
79.1
0.66
0.9
78.8
34.6
Minor 5ss
41.5
-0.9
3.1
56
48.2
Minor BPS
61.8
0.35
1.6
68.12
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030133
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038546
11705930 - 11805643
99714