Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_11787270_11791275_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11787270 - 11791275

Intron Length:

4006

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAGGTTTT

5'SS Class:

strong_major

3'SS Sequence:

ATTTATCTCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCAT

U12 Branch Point Sequence:

TTGTATTTATCT

Flanking Amino Acid:

GISTVQNGFYGSKSYQIAVR

Intron Amino Acid Position:

1469

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

80.5

34.9

Major BPS

94.9

1.12

0.6

93.9

14.7

Major PPT

80.7

0.69

0.8

77.9

35.5

Minor 5ss

44.9

-0.5

3.2

63.2

43.8

Minor BPS

61.6

0.44

1.8

80.6

41.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030133

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038546

11705930 - 11805643

99714